Quinoa Cookies
Learn how to make quinoa cookies with a satisfying crunch. This healthy quinoa cookie recipe uses whole wheat flour, oats, and chocolate chips for a hearty treat.
Another way to use up that Chocolate: Crispy Chocolate Chip Oatmeal Cookies, Cowboy Cookies, or No-Bake Cookies.
How I Ended Up Putting Quinoa in My Cookies
I know, I know. Quinoa in cookies sounds like a health-food experiment gone wrong. But hear me out. I was making a quinoa salad for dinner and got a sudden urge to bake. My husband Josh asked for his usual coconut-toffee chocolate chip cookies, but I had this idea. What if I tossed some leftover quinoa into the dough? He gave me that blank stare he does when he thinks I’ve lost it. I went ahead anyway. The result? A thick, hearty cookie with a tiny crunch from the quinoa that actually works. The whole wheat flour and oats keep it sturdy, and the cinnamon, nutmeg, and cloves make it taste like a cozy fall afternoon. Even Josh admitted these quinoa cookies are a winner.
Why These Quinoa Cookies Are Worth Baking
- The quinoa stays crunchy even after baking, so every bite has a little pop of texture that regular cookies just don’t have.
- Applesauce replaces some of the fat, making these whole wheat cookies soft in the middle while the oats and quinoa keep them from turning into cake.
- You get raisins and chocolate chips in the same cookie, which means sweet and chewy plus rich and melty in one spoonful.
Key Ingredients for These Quinoa Cookies
- Quinoa, Use raw, uncooked quinoa. It adds a nutty crunch that doesn’t soften during baking. No need to rinse or toast it first.
- Whole wheat flour, Gold Medal whole-wheat flour gives a hearty, slightly nutty base. You can substitute all-purpose flour, but the cookies will be less dense.
- Applesauce, Unsweetened applesauce replaces some butter and keeps the cookies moist without making them greasy. It also adds a subtle fruit sweetness.
Kitchen Tools for Quinoa Cookies
- Stand mixer or hand mixer for creaming the butter and sugar until smooth.
- Large baking sheet lined with parchment paper or a Silpat mat to prevent sticking.
- Wire cooling rack so the cookies cool evenly and don’t steam on the sheet.
Tips for Making the Best Quinoa Cookies
Use uncooked quinoa straight from the bag. Don’t rinse it or cook it first. The dry grains stay firm during baking and give that signature crunch. If you use cooked quinoa, the cookies will turn mushy and lose the texture that makes this recipe special.
Watch the bake time closely. Pull the cookies at 12 minutes if you like them softer, or let them go the full 14 minutes for a firmer bite. They should look just barely set in the center when you take them out. They’ll continue to firm up on the cooling rack.
Why Uncooked Quinoa Works in These Cookies
Most people think quinoa needs to be cooked before eating, but in this recipe the dry grains are a feature, not a mistake. As the cookies bake, the quinoa absorbs just enough moisture from the dough to soften slightly on the outside while staying firm in the center. That gives each cookie a tiny, pleasant crunch that you don’t get from oats or nuts. It also means you don’t have to cook the quinoa ahead of time, which saves a step. Just measure it straight from the bag and stir it in with the oats and chocolate chips.
Quinoa Cookie Variations to Try
Swap the raisins for dried cranberries or chopped dried apricots if you want a tarter pop. For a nut-free version, leave out the quinoa and add an extra half cup of oats, though you’ll lose the crunch. If you prefer a less sweet cookie, reduce the brown sugar to 3/4 cup and add an extra tablespoon of applesauce to keep the moisture. You can also use dark chocolate chips instead of semi-sweet for a deeper cocoa flavor.
How to Serve Quinoa Cookies
These cookies are great on their own with a glass of cold milk, but they also work as a lunchbox treat or a post-workout snack because of the oats and quinoa. For a dessert twist, sandwich a scoop of vanilla ice cream between two cookies. They also freeze well, so you can pull one out whenever a craving hits.
How to Store Leftover Quinoa Cookies
Keep the cookies in an airtight container at room temperature for up to 5 days. Place a sheet of wax paper between layers to prevent them from sticking. If your kitchen is humid, store them in the fridge to keep the quinoa crunch intact.
Can You Freeze Quinoa Cookies?
Yes, these cookies freeze beautifully. Let them cool completely, then arrange them in a single layer on a baking sheet and freeze until firm. Transfer to a freezer-safe bag or container and store for up to 3 months. Thaw at room temperature for about 15 minutes, or pop one in the microwave for 10 seconds for a just-baked feel.
Best Way to Reheat Quinoa Cookies
If you want that fresh-from-the-oven warmth, reheat a cookie in a 300°F oven for 3 to 4 minutes. This crisps the edges slightly without drying out the center. The microwave works in a pinch, but it will soften the quinoa crunch, so use it only if you’re in a hurry.
Quinoa Cookies FAQs
Do I need to cook the quinoa before adding it to the cookie dough?
No, use it raw straight from the bag. Uncooked quinoa stays crunchy during baking. Cooked quinoa would turn soft and make the cookies mushy.
Can I use all-purpose flour instead of whole wheat?
Yes, you can substitute an equal amount of all-purpose flour. The cookies will be lighter and less dense, but they’ll still taste great. The whole wheat version is heartier and more filling.
Why does this recipe use applesauce?
Applesauce replaces some of the butter, cutting down on fat while keeping the cookies moist. It also adds a mild sweetness that complements the cinnamon and nutmeg.
My cookies came out too dry. What went wrong?
Overbaking is the most common cause. Pull them at the first sign of setting, around 12 minutes. Also make sure your applesauce isn’t too thick; if it’s very chunky, blend it smooth first.
Recipe
Quinoa Cookies

Quinoa adds a nice little crunch to these thick and hearty cookies!
Ingredients
- 2 cup Gold Medal whole-wheat flour
- 0.5 tsp salt
- 2 tsp cinnamon
- 0.25 tsp ground cloves
- 0.5 tsp ground nutmeg
- 1 tsp baking soda
- 0.5 cup unsalted butter, room temperature
- 1 cup brown sugar
- 2 eggs, large
- 1 cup applesauce
- 2 tbsp vanilla extract
- 1 cup raisins
- 2.5 cup old-fashioned oats
- 0.5 cup quinoa, cooked and cooled
- 1 cup semi-sweet chocolate chips
Instructions
- 1
Preheat oven to 375 degrees F. Line a large baking sheet with parchment paper or a Silpat baking mat and set aside.
- 2
In a large bowl, whisk together flour, salt, cinnamon, cloves, nutmeg, and baking soda. Set aside. In the bowl of a stand mixer, cream together butter and brown sugar until smooth, about 3 minutes. Add in the eggs and vanilla extract. Add the applesauce and mix until combined. Stir in the raisins.
- 3
Slowly add the dry ingredients into liquid ingredients and mix until combined. Stir in the oats, quinoa, and chocolate chips.
- 4
Spoon about a tablespoon of dough onto a large baking sheet. Bake cookies for 12-14 minutes, or until cookies are just barely set. Remove cookies from baking sheet and cool on a wire cooling rack.
Nutrition (per serving)
Calorie breakdown
How this was calculated — 15 of 15 ingredients matched
Nutrition information is automatically calculated from USDA FoodData Central, so should only be used as an approximation. Actual values may vary depending on the ingredients, brands, and preparation methods used.
Open in analyzerKeyword: nutFree, Oven Baked, vegetarian
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